Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RELA

Cell type

Cell type Class
Blood
Cell type
GM12892
Tissue
blood
Lineage
mesoderm
Description
B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1463, treatment: Epstein-Barr Virus transformed

Attributes by original data submitter

Sample

source_name
Lymphoblastoid Cells
biomaterial_provider
GM12892
cell line
GM12892
cell type
Lymphoblastoid cell
treatment
TNF-alpha induced (6h)
chip antibody
NFκB p65 (C-20) rabbit polyclonal antibody

Sequenced DNA Library

library_name
GM12892_NFkB_II_ChIPSeq_Rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
4776143
Reads aligned (%)
93.2
Duplicates removed (%)
1.9
Number of peaks
2219 (qval < 1E-05)

hg38

Number of total reads
4776143
Reads aligned (%)
94.9
Duplicates removed (%)
1.6
Number of peaks
2116 (qval < 1E-05)

Base call quality data from DBCLS SRA