Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RELA

Cell type

Cell type Class
Blood
Cell type
GM15510
Tissue
blood
Lineage
mesoderm
Description
lymphoblastoid NIGMS Human Genetic Cell Repository, DNA Polymorphism Discovery Resource Collection, treatment: Epstein-Barr Virus transformed

Attributes by original data submitter

Sample

source_name
Lymphoblastoid Cells
biomaterial_provider
GM15510
cell line
GM15510
cell type
Lymphoblastoid cell
treatment
TNF-alpha induced (6h)
chip antibody
NFκB p65 (C-20) rabbit polyclonal antibody

Sequenced DNA Library

library_name
GM15510_NFkB_II_ChIPSeq_Rep4
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
16519706
Reads aligned (%)
73.6
Duplicates removed (%)
2.4
Number of peaks
3898 (qval < 1E-05)

hg38

Number of total reads
16519706
Reads aligned (%)
76.2
Duplicates removed (%)
3.1
Number of peaks
3808 (qval < 1E-05)

Base call quality data from DBCLS SRA