Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
GM18526
Tissue
blood
Lineage
mesoderm
Description
lymphoblastoid, International HapMap Project, Han Chinese in Beijing, China, treatment: Epstein-Barr Virus transformed

Attributes by original data submitter

Sample

source_name
Lymphoblastoid Cells
biomaterial_provider
GM18505
cell line
GM18505
cell type
Lymphoblastoid cell
treatment
TNF-alpha induced (6h)
chip antibody
normal rabbit IgG

Sequenced DNA Library

library_name
GM18505_NFkB_II_ChIPSeq_IgG_Rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
6658375
Reads aligned (%)
95.1
Duplicates removed (%)
1.2
Number of peaks
80 (qval < 1E-05)

hg19

Number of total reads
6658375
Reads aligned (%)
93.6
Duplicates removed (%)
1.7
Number of peaks
110 (qval < 1E-05)

Base call quality data from DBCLS SRA