Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HeLa cell
cell type
HeLa cell
antibody
anti-H3K4me3 Ab
sirna
siWDR5
treatment
n/a

Sequenced DNA Library

library_name
HeLa-siWDR5-H3K4me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg38

Number of total reads
5627540
Reads aligned (%)
68.1
Duplicates removed (%)
11.2
Number of peaks
11697 (qval < 1E-05)

hg19

Number of total reads
5627540
Reads aligned (%)
67.4
Duplicates removed (%)
11.2
Number of peaks
12173 (qval < 1E-05)

Base call quality data from DBCLS SRA