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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: RNA polymerase II
wikigenes
PDBj
CellType: CD4+ T cells
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX017719
GSM393968: CD4-PolII-HDACi-12h
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
RNA polymerase
Antigen
RNA polymerase II
Cell type
Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA
Attributes by original data submitter
Sample
source_name
CD4+ T cell
cell type
CD4+ T cell
antibody
anti-RNA Pol II Ab
sirna
n/a
treatment
Trichostatin + sodium butyrate for 12 hours
Sequenced DNA Library
library_name
CD4-PolII-HDACi-12h
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
17766142
Reads aligned (%)
68.2
Duplicates removed (%)
4.2
Number of peaks
7024 (qval < 1E-05)
hg19
Number of total reads
17766142
Reads aligned (%)
67.5
Duplicates removed (%)
4.7
Number of peaks
7024 (qval < 1E-05)
Base call quality data from
DBCLS SRA