Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD4+ T cell
cell type
CD4+ T cell
antibody
anti-RNA Pol II Ab
sirna
n/a
treatment
Trichostatin + sodium butyrate for 12 hours

Sequenced DNA Library

library_name
CD4-PolII-HDACi-12h
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg38

Number of total reads
17766142
Reads aligned (%)
68.2
Duplicates removed (%)
4.2
Number of peaks
7024 (qval < 1E-05)

hg19

Number of total reads
17766142
Reads aligned (%)
67.5
Duplicates removed (%)
4.7
Number of peaks
7024 (qval < 1E-05)

Base call quality data from DBCLS SRA