SRX017710
GSM393957: Act-CD4-HDAC6

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HDAC6

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD4+ T cell
cell type
CD4+ T cell
antibody
anti-HDAC6 Ab
sirna
n/a
treatment
n/a

Sequenced DNA Library

library_name
Act-CD4-HDAC6
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
33390480
Reads aligned (%)
51.1
Duplicates removed (%)
4.9
Number of peaks
2025 (qval < 1E-05)

hg19

Number of total reads
33390480
Reads aligned (%)
50.7
Duplicates removed (%)
5.4
Number of peaks
1913 (qval < 1E-05)

Base call quality data from DBCLS SRA