Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HDAC3

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD4+ T cell
cell type
CD4+ T cell
antibody
anti-HDAC3 Ab
sirna
n/a
treatment
n/a

Sequenced DNA Library

library_name
CD4-HDAC3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
20862833
Reads aligned (%)
47.6
Duplicates removed (%)
6.2
Number of peaks
4641 (qval < 1E-05)

hg38

Number of total reads
20862833
Reads aligned (%)
48.2
Duplicates removed (%)
5.9
Number of peaks
1142 (qval < 1E-05)

Base call quality data from DBCLS SRA