ChIP-Atlas: SRX017704

Sample information curated by ChIP-Atlas

Antigen

Antigen Class: TFs and others
Antigen: HDAC2

Cell type

Cell type Class: Blood
Cell type: CD4+ T cells
NA: NA

Attributes by original data submitter

Sample

source_name: CD4+ T cell
cell type: CD4+ T cell
antibody: anti-HDAC2 Ab
sirna: n/a
treatment: n/a

Sequenced DNA Library

library_name: CD4-HDAC2
library_strategy: ChIP-Seq
library_source: GENOMIC
library_selection: ChIP

Sequencing Platform

instrument_model: Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads: 20385095
Reads aligned (%): 58.5
Duplicates removed (%): 29.0
Number of peaks: 214 (qval < 1E-05)

hg19

Number of total reads: 20385095
Reads aligned (%): 57.7
Duplicates removed (%): 29.7
Number of peaks: 4156 (qval < 1E-05)

Base call quality data from DBCLS SRA