Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HDAC1

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD4+ T cell
cell type
CD4+ T cell
antibody
anti-HDAC1 Ab
sirna
n/a
treatment
n/a

Sequenced DNA Library

library_name
CD4-HDAC1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
17171558
Reads aligned (%)
49.3
Duplicates removed (%)
27.3
Number of peaks
2826 (qval < 1E-05)

hg38

Number of total reads
17171558
Reads aligned (%)
50.0
Duplicates removed (%)
26.9
Number of peaks
2793 (qval < 1E-05)

Base call quality data from DBCLS SRA