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Install and launch IGV before selecting data to visualize
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: KAT2B
wikigenes
PDBj
CellType: CD4+ T cells
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX017700
GSM393947: CD4-PCAF
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
KAT2B
Cell type
Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA
Attributes by original data submitter
Sample
source_name
CD4+ T cell
cell type
CD4+ T cell
antibody
anti-PCAF Ab
sirna
n/a
treatment
n/a
Sequenced DNA Library
library_name
CD4-PCAF
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
31429011
Reads aligned (%)
41.5
Duplicates removed (%)
27.8
Number of peaks
1268 (qval < 1E-05)
hg38
Number of total reads
31429011
Reads aligned (%)
41.9
Duplicates removed (%)
27.1
Number of peaks
1234 (qval < 1E-05)
Base call quality data from
DBCLS SRA