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For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: TP53
wikigenes
PDBj
CellType: BJ
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX017560
GSM508794: BJ p53KD +RAS IPp53
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
TP53
Cell type
Cell type Class
Epidermis
Cell type
BJ
Primary Tissue
Skin
Tissue Diagnosis
Normal
Attributes by original data submitter
Sample
source_name
BJ primary foreskin fibroblasts, p53 knockdown IP
cell line
BJ
cell type
foreskin fibroblasts
oncogene expression
RasV12
vector
p53 knockdown
antibody
anti-p53
sample type
control
Sequenced DNA Library
library_name
BJ_p53KD_+RAS_IPp53
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
10468397
Reads aligned (%)
71.3
Duplicates removed (%)
11.7
Number of peaks
1639 (qval < 1E-05)
hg38
Number of total reads
10468397
Reads aligned (%)
71.7
Duplicates removed (%)
11.1
Number of peaks
1445 (qval < 1E-05)
Base call quality data from
DBCLS SRA