Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TP53

Cell type

Cell type Class
Epidermis
Cell type
BJ
Primary Tissue
Skin
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
BJ primary foreskin fibroblasts, p53 knockdown IP
cell line
BJ
cell type
foreskin fibroblasts
oncogene expression
RasV12
vector
p53 knockdown
antibody
anti-p53
sample type
control

Sequenced DNA Library

library_name
BJ_p53KD_+RAS_IPp53
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
10468397
Reads aligned (%)
62.9
Duplicates removed (%)
11.7
Number of peaks
1639 (qval < 1E-05)

hg38

Number of total reads
10468397
Reads aligned (%)
63.7
Duplicates removed (%)
11.1
Number of peaks
1445 (qval < 1E-05)

Base call quality data from DBCLS SRA