Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
BRD7

Cell type

Cell type Class
Epidermis
Cell type
BJ
Primary Tissue
Skin
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
BJ primary foreskin fibroblasts, BRD7 knockdown IP
cell line
BJ
cell type
foreskin fibroblasts
oncogene expression
RasV12
vector
BRD7 knockdown
antibody
anti-BRD7
sample type
control

Sequenced DNA Library

library_name
BJ_BRD7KD_+RAS_IPBRD7
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
10966699
Reads aligned (%)
68.6
Duplicates removed (%)
8.3
Number of peaks
1410 (qval < 1E-05)

hg38

Number of total reads
10966699
Reads aligned (%)
69.5
Duplicates removed (%)
7.7
Number of peaks
1190 (qval < 1E-05)

Base call quality data from DBCLS SRA