SRX017325
GSM518559: PHF8 in SH-SY5Y

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
PHF8

Cell type

Cell type Class
Neural
Cell type
SH-SY5Y
Primary Tissue
Brain
Tissue Diagnosis
Neuroblastoma

Attributes by original data submitter

Sample

source_name
neuroblastoma cell line
cell line
neuroblastoma cell line SH-SY5Y
subclone
neuroblast-like subclone of SK-N-SH
antibody
anti-PHF8

Sequenced DNA Library

library_name
PHF8 in SH-SY5Y
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
12479327
Reads aligned (%)
91.7
Duplicates removed (%)
11.9
Number of peaks
8496 (qval < 1E-05)

hg19

Number of total reads
12479327
Reads aligned (%)
91.0
Duplicates removed (%)
12.7
Number of peaks
8445 (qval < 1E-05)

Base call quality data from DBCLS SRA