SRX017324
GSM518558: H3K4me3 in SH-SY5Y

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Neural
Cell type
SH-SY5Y
Primary Tissue
Brain
Tissue Diagnosis
Neuroblastoma

Attributes by original data submitter

Sample

source_name
neuroblastoma cell line
cell line
neuroblastoma cell line SH-SY5Y
subclone
neuroblast-like subclone of SK-N-SH
antibody
anti-H3K4me3

Sequenced DNA Library

library_name
H3K4me3 in SH-SY5Y
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
12803623
Reads aligned (%)
86.5
Duplicates removed (%)
16.2
Number of peaks
15097 (qval < 1E-05)

hg19

Number of total reads
12803623
Reads aligned (%)
86.0
Duplicates removed (%)
16.7
Number of peaks
15219 (qval < 1E-05)

Base call quality data from DBCLS SRA