Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA

Attributes by original data submitter

Sample

source_name
embryonic stem cells
antibody
CTCF
cell line
H1
cell type
embryonic stem cell
passages
28
antibody manufacturer
Upstate (07-729)

Sequenced DNA Library

library_name
CTCF
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
21147874
Reads aligned (%)
59.5
Duplicates removed (%)
11.4
Number of peaks
58671 (qval < 1E-05)

hg38

Number of total reads
21147874
Reads aligned (%)
60.3
Duplicates removed (%)
10.7
Number of peaks
58797 (qval < 1E-05)

Base call quality data from DBCLS SRA