SRX017277
GSM518374: NANOG

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NANOG

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA

Attributes by original data submitter

Sample

source_name
embryonic stem cells
antibody
NANOG
cell line
H1
cell type
embryonic stem cell
passages
28
antibody manufacturer
R&D (AF1997)

Sequenced DNA Library

library_name
NANOG
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
21908523
Reads aligned (%)
52.2
Duplicates removed (%)
9.0
Number of peaks
33150 (qval < 1E-05)

hg19

Number of total reads
21908523
Reads aligned (%)
52.0
Duplicates removed (%)
9.4
Number of peaks
32981 (qval < 1E-05)

Base call quality data from DBCLS SRA