Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Neural
Cell type
Brain
MeSH Description
The part of CENTRAL NERVOUS SYSTEM that is contained within the skull (CRANIUM). Arising from the NEURAL TUBE, the embryonic brain is comprised of three major parts including PROSENCEPHALON (the forebrain); MESENCEPHALON (the midbrain); and RHOMBENCEPHALON (the hindbrain). The developed brain consists of CEREBRUM; CEREBELLUM; and other structures in the BRAIN STEM.

Attributes by original data submitter

Sample

source_name
Whole Brain
tissue
Whole Brain
strain
C57BL/6
age
9 weeks
chip antibody
RNA Polymerase II (Unmodified - AB817 - Abcam)

Sequenced DNA Library

library_name
RNAPII
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

mm10

Number of total reads
17122381
Reads aligned (%)
50.8
Duplicates removed (%)
18.3
Number of peaks
13894 (qval < 1E-05)

mm9

Number of total reads
17122381
Reads aligned (%)
50.7
Duplicates removed (%)
18.6
Number of peaks
13918 (qval < 1E-05)

Base call quality data from DBCLS SRA