SRX017081
GSM398012: INPUT DNA in wild-type MEF

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryonic fibroblast
Cell type
MEF
Tissue
Embryonic Fibroblast
Lineage
primaryCells
Description
Mouse Embryonic Fibroblast

Attributes by original data submitter

Sample

source_name
mouse embryonic fibroblasts (MEF)
strain
C57BL/6
passages
6-7
chip antibody
no antibody

Sequenced DNA Library

library_name
INPUT DNA in wild-type MEF
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
12029975
Reads aligned (%)
69.3
Duplicates removed (%)
37.1
Number of peaks
2665 (qval < 1E-05)

mm9

Number of total reads
12029975
Reads aligned (%)
68.8
Duplicates removed (%)
37.4
Number of peaks
2610 (qval < 1E-05)

Base call quality data from DBCLS SRA