SRX017030
GSM489299: GM19238 CTCF REP1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Blood
Cell type
Lymphoblastoid cells
NA
NA

Attributes by original data submitter

Sample

source_name
lymphoblastoid cells
biomaterial_provider
NA19238
individual
NA19238

Sequenced DNA Library

library_name
GM19238_CTCF_REP1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
16368229
Reads aligned (%)
96.6
Duplicates removed (%)
20.1
Number of peaks
41682 (qval < 1E-05)

hg19

Number of total reads
16368229
Reads aligned (%)
95.9
Duplicates removed (%)
20.1
Number of peaks
43042 (qval < 1E-05)

Base call quality data from DBCLS SRA