Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Blood
Cell type
Lymphoblastoid cells
NA
NA

Attributes by original data submitter

Sample

source_name
lymphoblastoid cells
biomaterial_provider
NA12878
individual
NA12878

Sequenced DNA Library

library_name
GM12878_CTCF_REP1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg38

Number of total reads
8420728
Reads aligned (%)
94.4
Duplicates removed (%)
8.7
Number of peaks
35856 (qval < 1E-05)

hg19

Number of total reads
8420728
Reads aligned (%)
93.7
Duplicates removed (%)
9.0
Number of peaks
37174 (qval < 1E-05)

Base call quality data from DBCLS SRA