SRX017015
GSM489284: GM19240 DNAse REP1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Blood
Cell type
Lymphoblastoid cells
NA
NA

Attributes by original data submitter

Sample

source_name
lymphoblastoid cells
biomaterial_provider
NA19240
individual
NA19240

Sequenced DNA Library

library_name
GM19240_DNAse_REP1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
48105074
Reads aligned (%)
98.4
Duplicates removed (%)
35.3
Number of peaks
15366 (qval < 1E-05)

hg19

Number of total reads
48105074
Reads aligned (%)
98.0
Duplicates removed (%)
36.6
Number of peaks
17730 (qval < 1E-05)

Base call quality data from DBCLS SRA