SRX017014
GSM489283: GM12892 DNAse REP2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Blood
Cell type
Lymphoblastoid cells
NA
NA

Attributes by original data submitter

Sample

source_name
lymphoblastoid cells
biomaterial_provider
NA12892
individual
NA12892

Sequenced DNA Library

library_name
GM12892_DNAse_REP2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
47313906
Reads aligned (%)
98.3
Duplicates removed (%)
20.6
Number of peaks
22593 (qval < 1E-05)

hg19

Number of total reads
47313906
Reads aligned (%)
97.3
Duplicates removed (%)
20.8
Number of peaks
23793 (qval < 1E-05)

Base call quality data from DBCLS SRA