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Install and launch IGV before selecting data to visualize
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: TP53
wikigenes
PDBj
CellType: Saos-2
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX016980
GSM501692: p53 ChIPSeq replicate2
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
TP53
Cell type
Cell type Class
Bone
Cell type
Saos-2
Primary Tissue
Bone
Tissue Diagnosis
Osteosarcoma
Attributes by original data submitter
Sample
source_name
p53 Saos-2 cell line
cell line
Saos-2
cell type
osteosarcoma
antibody
DO1 against p53
genetic modification
Tet-on FLp53
Sequenced DNA Library
library_name
p53_ChIPSeq_replicate2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
19904164
Reads aligned (%)
91.3
Duplicates removed (%)
6.1
Number of peaks
18550 (qval < 1E-05)
hg38
Number of total reads
19904164
Reads aligned (%)
92.8
Duplicates removed (%)
5.1
Number of peaks
18131 (qval < 1E-05)
Base call quality data from
DBCLS SRA