SRX016980
GSM501692: p53 ChIPSeq replicate2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TP53

Cell type

Cell type Class
Bone
Cell type
Saos-2
Primary Tissue
Bone
Tissue Diagnosis
Osteosarcoma

Attributes by original data submitter

Sample

source_name
p53 Saos-2 cell line
cell line
Saos-2
cell type
osteosarcoma
antibody
DO1 against p53
genetic modification
Tet-on FLp53

Sequenced DNA Library

library_name
p53_ChIPSeq_replicate2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
19904164
Reads aligned (%)
97.2
Duplicates removed (%)
6.1
Number of peaks
18550 (qval < 1E-05)

hg38

Number of total reads
19904164
Reads aligned (%)
97.7
Duplicates removed (%)
5.1
Number of peaks
18131 (qval < 1E-05)

Base call quality data from DBCLS SRA