SRX016975
GSM501687: TAp73alpha ChIPSeq replicate1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TP73

Cell type

Cell type Class
Bone
Cell type
Saos-2
Primary Tissue
Bone
Tissue Diagnosis
Osteosarcoma

Attributes by original data submitter

Sample

source_name
TAp73alpha Saos-2 cell line
cell line
Saos-2
cell type
osteosarcoma
antibody
BL906 against p73
genetic modification
Tet-on TAp73alpha

Sequenced DNA Library

library_name
TAp73alpha_ChIPSeq_replicate1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
18437574
Reads aligned (%)
95.9
Duplicates removed (%)
12.5
Number of peaks
16488 (qval < 1E-05)

hg38

Number of total reads
18437574
Reads aligned (%)
96.5
Duplicates removed (%)
11.5
Number of peaks
16468 (qval < 1E-05)

Base call quality data from DBCLS SRA