Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic stem cells
strain
W9.5
cell type
W9.5 embryonic stem cells
chip antibody
anti-HA (12CA5) control. No HA epitope in untagged ES cells

Sequenced DNA Library

library_name
ES_wild_type_antiHA_control_xChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

mm10

Number of total reads
5016423
Reads aligned (%)
65.2
Duplicates removed (%)
7.4
Number of peaks
295 (qval < 1E-05)

mm9

Number of total reads
5016423
Reads aligned (%)
65.1
Duplicates removed (%)
7.9
Number of peaks
290 (qval < 1E-05)

Base call quality data from DBCLS SRA