SRX016859
GSM487560: Atrxflox ES H33 EYFP Input nChIPSeq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic stem cells
strain
Atrxflox H3.3-EYFP / H3.3B
cell type
Atrxflox embryonic stem cells
chip antibody
native ChIP input control. No antibody.

Sequenced DNA Library

library_name
Atrxflox_ES_H33_EYFP_Input_nChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
5010241
Reads aligned (%)
96.0
Duplicates removed (%)
5.2
Number of peaks
238 (qval < 1E-05)

mm9

Number of total reads
5010241
Reads aligned (%)
95.9
Duplicates removed (%)
5.4
Number of peaks
256 (qval < 1E-05)

Base call quality data from DBCLS SRA