Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic stem cells
strain
Hira -/- H3.3-EYFP / H3.3B
cell type
cl34 Hira -/- embryonic stem cells
chip antibody
native ChIP input control. No antibody.

Sequenced DNA Library

library_name
Hiranull_ES_H33_EYFP_Input_nChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

mm10

Number of total reads
6115126
Reads aligned (%)
95.8
Duplicates removed (%)
7.4
Number of peaks
251 (qval < 1E-05)

mm9

Number of total reads
6115126
Reads aligned (%)
95.6
Duplicates removed (%)
7.6
Number of peaks
266 (qval < 1E-05)

Base call quality data from DBCLS SRA