SRX016851
GSM487552: ES H33 EYFP Input nChIPSeq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic stem cells
strain
C57BL/6 H3.3-EYFP / H3.3B
chip antibody
native ChIP input control. No antibody.

Sequenced DNA Library

library_name
ES_H33_EYFP_Input_nChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
3806626
Reads aligned (%)
96.1
Duplicates removed (%)
10.3
Number of peaks
1508 (qval < 1E-05)

mm9

Number of total reads
3806626
Reads aligned (%)
95.9
Duplicates removed (%)
10.6
Number of peaks
1506 (qval < 1E-05)

Base call quality data from DBCLS SRA