SRX016702
GSM451988: H3K4me3 ChIP-Seq SCS805 (Illumina)

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF-7 cells
library
ChIP-Seq
antibody target
H3K4me3

Sequenced DNA Library

library_name
H3K4me3_ChIP-Seq_SCS805 (Illumina)
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
15793763
Reads aligned (%)
11.9
Duplicates removed (%)
9.3
Number of peaks
341 (qval < 1E-05)

hg19

Number of total reads
15793763
Reads aligned (%)
11.7
Duplicates removed (%)
9.8
Number of peaks
328 (qval < 1E-05)

Base call quality data from DBCLS SRA