Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SNAPC2

Cell type

Cell type Class
Lung
Cell type
IMR-90
Primary Tissue
Lung
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
IMR90hTert_SNAP45
cell type
IMR90hTert
antibody
SNAP45

Sequenced DNA Library

library_name
IMR90hTert_SNAP45
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
35759292
Reads aligned (%)
64.4
Duplicates removed (%)
15.8
Number of peaks
1467 (qval < 1E-05)

hg38

Number of total reads
35759292
Reads aligned (%)
65.8
Duplicates removed (%)
14.7
Number of peaks
1691 (qval < 1E-05)

Base call quality data from DBCLS SRA