SRX016327
GSM470419: MCF7 E2 ER

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ESR1

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF7
cell line
MCF7
cell type
estrogen-responsive breast cancer
antibody
Estrogen Receptor (ER)
treatment variable
hormone starved for 3 days, treated with 10 nM β-estradiol for 45 minutes

Sequenced DNA Library

library_name
MCF7_E2_ER
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
3624961
Reads aligned (%)
59.3
Duplicates removed (%)
18.0
Number of peaks
4501 (qval < 1E-05)

hg19

Number of total reads
3624961
Reads aligned (%)
58.9
Duplicates removed (%)
18.4
Number of peaks
4483 (qval < 1E-05)

Base call quality data from DBCLS SRA