Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ESR1

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF7
cell line
MCF7
cell type
estrogen-responsive breast cancer
antibody
Estrogen Receptor (ER)
treatment variable
hormone starved for 3 days, treated with 1% ethanol for 45 minutes

Sequenced DNA Library

library_name
MCF7_ethl_ER
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
5189798
Reads aligned (%)
58.0
Duplicates removed (%)
16.9
Number of peaks
195 (qval < 1E-05)

hg38

Number of total reads
5189798
Reads aligned (%)
58.9
Duplicates removed (%)
16.2
Number of peaks
184 (qval < 1E-05)

Base call quality data from DBCLS SRA