SRX016166
GSM499657: WPP ChIPSeq 1, 2 and 3

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GFP

Cell type

Cell type Class
Pupae
Cell type
White prepupae
NA
NA

Attributes by original data submitter

Sample

source_name
WPP_EcRGFP_ChIPSeq_1, 2 and 3
development stage
WhitePrePupae10-11
antibody
goat anti GFP
test
ChIP

Sequenced DNA Library

library_name
WPP_ChIPSeq_1, 2 and 3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

dm6

Number of total reads
36986022
Reads aligned (%)
91.8
Duplicates removed (%)
39.8
Number of peaks
2149 (qval < 1E-05)

dm3

Number of total reads
36986022
Reads aligned (%)
92.0
Duplicates removed (%)
38.6
Number of peaks
0 (qval < 1E-05)

Base call quality data from DBCLS SRA