Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Cell line
Cell type
S2
Source
Oregon R
Developmental Stage
late embryonic stage

Attributes by original data submitter

Sample

source_name
S2_CTCF200_ChIPSeq_1 and 2
cell line
S2
antibody
CTCF
test
ChIP

Sequenced DNA Library

library_name
S2_CTCF200_ChIPSeq_1 and 2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

dm3

Number of total reads
7904780
Reads aligned (%)
61.7
Duplicates removed (%)
30.9
Number of peaks
4304 (qval < 1E-05)

dm6

Number of total reads
7904780
Reads aligned (%)
60.2
Duplicates removed (%)
32.2
Number of peaks
4258 (qval < 1E-05)

Base call quality data from DBCLS SRA