Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
cad

Cell type

Cell type Class
Embryo
Cell type
0-4h embryos
NA
NA

Attributes by original data submitter

Sample

source_name
E0-4h_7T_ChIPSeq_1 and 2
development stage
E0-4h
antibody
Caudal
test
ChIP

Sequenced DNA Library

library_name
E0-4h_7T_ChIPSeq_1 and 2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

dm3

Number of total reads
25843296
Reads aligned (%)
39.9
Duplicates removed (%)
57.5
Number of peaks
3089 (qval < 1E-05)

dm6

Number of total reads
25843296
Reads aligned (%)
38.0
Duplicates removed (%)
59.4
Number of peaks
4039 (qval < 1E-05)

Base call quality data from DBCLS SRA