SRX016149
GSM499640: E0-12 HDAC-498 ChIPSeq 1 and 2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Hdac3

Cell type

Cell type Class
Embryo
Cell type
0-12h embryos
NA
NA

Attributes by original data submitter

Sample

source_name
E0-12_HDAC-498_ChIPSeq_1 and 2
development stage
E0-12h
antibody
HDAC3
test
ChIP

Sequenced DNA Library

library_name
E0-12_HDAC-498_ChIPSeq_1 and 2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

dm6

Number of total reads
19370179
Reads aligned (%)
98.5
Duplicates removed (%)
72.5
Number of peaks
4195 (qval < 1E-05)

dm3

Number of total reads
19370179
Reads aligned (%)
98.6
Duplicates removed (%)
71.7
Number of peaks
4222 (qval < 1E-05)

Base call quality data from DBCLS SRA