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Install and launch IGV before selecting data to visualize
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For dm6
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For dm3
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: HDAC6
wikigenes
PDBj
CellType: 0-12h embryos
ATCC
MeSH
RIKEN BRC
SRX016148
GSM499639: E0-12 HDAC-497 ChIPSeq 1 and 2
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
HDAC6
Cell type
Cell type Class
Embryo
Cell type
0-12h embryos
NA
NA
Attributes by original data submitter
Sample
source_name
E0-12_HDAC-497_ChIPSeq_1 amd 2
development stage
E0-12h
antibody
HDAC6
test
ChIP
Sequenced DNA Library
library_name
E0-12_HDAC-497_ChIPSeq_1 and 2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
dm6
Number of total reads
27757223
Reads aligned (%)
97.8
Duplicates removed (%)
70.3
Number of peaks
8334 (qval < 1E-05)
dm3
Number of total reads
27757223
Reads aligned (%)
98.0
Duplicates removed (%)
69.2
Number of peaks
8156 (qval < 1E-05)
Base call quality data from
DBCLS SRA