SRX016146
GSM499637: E0-12 HDAC-495 ChIPSeq 1 and 2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HdacX

Cell type

Cell type Class
Embryo
Cell type
0-12h embryos
NA
NA

Attributes by original data submitter

Sample

source_name
E0-12_HDAC-495_ChIPSeq_1 and 2
development stage
E0-12h
antibody
HDAC11
test
ChIP

Sequenced DNA Library

library_name
E0-12_HDAC-495_ChIPSeq_1 and 2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

dm6

Number of total reads
22983120
Reads aligned (%)
97.0
Duplicates removed (%)
52.2
Number of peaks
5771 (qval < 1E-05)

dm3

Number of total reads
22983120
Reads aligned (%)
97.3
Duplicates removed (%)
50.2
Number of peaks
2324 (qval < 1E-05)

Base call quality data from DBCLS SRA