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Install and launch IGV before selecting data to visualize
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For dm3
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For dm6
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: HDAC4
wikigenes
PDBj
CellType: 0-12h embryos
ATCC
MeSH
RIKEN BRC
SRX016144
GSM499635: E0-12 HDAC-493 ChIPSeq 1 and 2
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
HDAC4
Cell type
Cell type Class
Embryo
Cell type
0-12h embryos
NA
NA
Attributes by original data submitter
Sample
source_name
E0-12_HDAC-493_ChIPSeq_1 and 2
development stage
E0-12h
antibody
HDAC4a
test
ChIP
Sequenced DNA Library
library_name
E0-12_HDAC-493_ChIPSeq_1 and 2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
dm3
Number of total reads
27419940
Reads aligned (%)
43.9
Duplicates removed (%)
55.1
Number of peaks
10116 (qval < 1E-05)
dm6
Number of total reads
27419940
Reads aligned (%)
42.2
Duplicates removed (%)
56.7
Number of peaks
10473 (qval < 1E-05)
Base call quality data from
DBCLS SRA