Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HDAC4

Cell type

Cell type Class
Embryo
Cell type
0-12h embryos
NA
NA

Attributes by original data submitter

Sample

source_name
E0-12_HDAC-492_ChIPSeq_1 and 2
development stage
E0-12h
antibody
HDAC4a
test
ChIP

Sequenced DNA Library

library_name
E0-12_HDAC-492_ChIPSeq_1 and 2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

dm3

Number of total reads
19491543
Reads aligned (%)
25.9
Duplicates removed (%)
73.1
Number of peaks
2759 (qval < 1E-05)

dm6

Number of total reads
19491543
Reads aligned (%)
24.2
Duplicates removed (%)
74.7
Number of peaks
3692 (qval < 1E-05)

Base call quality data from DBCLS SRA