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For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: RB1
wikigenes
PDBj
CellType: IMR-90
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX016037
GSM497498: Senescent cells expressing shRNA targeting RB pRb ChIP-seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
RB1
Cell type
Cell type Class
Lung
Cell type
IMR-90
Primary Tissue
Lung
Tissue Diagnosis
Normal
Attributes by original data submitter
Sample
source_name
Chromatin IP against pRb
chip antibody
pRb
cell line
IMR90
growth state
Senescent
Sequenced DNA Library
library_name
Senescent cells expressing shRNA targeting RB pRb ChIP-seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
7661825
Reads aligned (%)
58.0
Duplicates removed (%)
7.3
Number of peaks
3739 (qval < 1E-05)
hg38
Number of total reads
7661825
Reads aligned (%)
58.9
Duplicates removed (%)
6.6
Number of peaks
3616 (qval < 1E-05)
Base call quality data from
DBCLS SRA