SRX016037
GSM497498: Senescent cells expressing shRNA targeting RB pRb ChIP-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RB1

Cell type

Cell type Class
Lung
Cell type
IMR-90
Primary Tissue
Lung
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
Chromatin IP against pRb
chip antibody
pRb
cell line
IMR90
growth state
Senescent

Sequenced DNA Library

library_name
Senescent cells expressing shRNA targeting RB pRb ChIP-seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
7661825
Reads aligned (%)
58.0
Duplicates removed (%)
7.3
Number of peaks
3739 (qval < 1E-05)

hg38

Number of total reads
7661825
Reads aligned (%)
58.9
Duplicates removed (%)
6.6
Number of peaks
3616 (qval < 1E-05)

Base call quality data from DBCLS SRA