Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RB1

Cell type

Cell type Class
Lung
Cell type
IMR-90
Primary Tissue
Lung
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
Chromatin IP against pRb
chip antibody
pRb
cell line
IMR90
growth state
Quiescent

Sequenced DNA Library

library_name
Quiescent cells expressing shRNA targeting RB pRb ChIP-seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
7857030
Reads aligned (%)
55.8
Duplicates removed (%)
7.3
Number of peaks
2735 (qval < 1E-05)

hg38

Number of total reads
7857030
Reads aligned (%)
56.8
Duplicates removed (%)
6.4
Number of peaks
2591 (qval < 1E-05)

Base call quality data from DBCLS SRA