Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RB1

Cell type

Cell type Class
Lung
Cell type
IMR-90
Primary Tissue
Lung
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
Chromatin IP against pRb
chip antibody
pRb
cell line
IMR90
growth state
Senescent

Sequenced DNA Library

library_name
Senescent cells pRb ChIP-seq experiment 2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
7463640
Reads aligned (%)
43.3
Duplicates removed (%)
11.5
Number of peaks
6533 (qval < 1E-05)

hg38

Number of total reads
7463640
Reads aligned (%)
43.7
Duplicates removed (%)
11.0
Number of peaks
5950 (qval < 1E-05)

Base call quality data from DBCLS SRA