SRX016029
GSM497490: Quiescent cells pRb ChIP-seq experiment 1, replicate 1+2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RB1

Cell type

Cell type Class
Lung
Cell type
IMR-90
Primary Tissue
Lung
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
Chromatin IP against pRb
chip antibody
pRb
cell line
IMR90
growth state
Quiescent

Sequenced DNA Library

library_name
Quiescent cells pRb ChIP-seq experiment 1, replicate 1+2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
13558902
Reads aligned (%)
40.3
Duplicates removed (%)
20.7
Number of peaks
8556 (qval < 1E-05)

hg38

Number of total reads
13558902
Reads aligned (%)
41.0
Duplicates removed (%)
19.9
Number of peaks
8490 (qval < 1E-05)

Base call quality data from DBCLS SRA