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Install and launch IGV before selecting data to visualize
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: CREBBP
wikigenes
PDBj
CellType: Jurkat (Clone E6-1)
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX015827
GSM449527: Jurkat CBP ChIPseq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
CREBBP
Cell type
Cell type Class
Blood
Cell type
Jurkat (Clone E6-1)
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Lymphocytic
Attributes by original data submitter
Sample
source_name
CBP ChIP
cell type
Jurkat, clone E6-1 T lymphocyte
antibody
CBP A-22 from Santa Cruz Biotechnology
Sequenced DNA Library
library_name
Jurkat_CBP_ChIPseq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
11680385
Reads aligned (%)
82.5
Duplicates removed (%)
13.2
Number of peaks
9924 (qval < 1E-05)
hg38
Number of total reads
11680385
Reads aligned (%)
84.4
Duplicates removed (%)
12.0
Number of peaks
9923 (qval < 1E-05)
Base call quality data from
DBCLS SRA