Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RUNX1

Cell type

Cell type Class
Blood
Cell type
Jurkat (Clone E6-1)
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Lymphocytic

Attributes by original data submitter

Sample

source_name
RUNX ChIP
cell type
Jurkat, clone E6-1 T lymphocyte
antibody
RUNX monoclonal from Nancy Speck

Sequenced DNA Library

library_name
Jurkat_RUNX_ChIPseq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
13256215
Reads aligned (%)
62.8
Duplicates removed (%)
32.6
Number of peaks
795 (qval < 1E-05)

hg38

Number of total reads
13256215
Reads aligned (%)
64.9
Duplicates removed (%)
31.1
Number of peaks
778 (qval < 1E-05)

Base call quality data from DBCLS SRA