SRX015146
GSM487431: GM12878 PolII ChIPSeq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562
biomaterial_provider
cellBiology
growth properties
Suspension Morphology
lymphoblast antibody
RNA Pol II

Sequenced DNA Library

library_name
GM12878_PolII_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
14786599
Reads aligned (%)
81.2
Duplicates removed (%)
6.7
Number of peaks
15510 (qval < 1E-05)

hg19

Number of total reads
14786599
Reads aligned (%)
79.7
Duplicates removed (%)
6.6
Number of peaks
16096 (qval < 1E-05)

Base call quality data from DBCLS SRA