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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Gata1
wikigenes
PDBj
CellType: MEL86
ATCC
MeSH
RIKEN BRC
SRX015120
GSM417015: GATA-1 ChIPSeq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Gata1
Cell type
Cell type Class
Blood
Cell type
MEL86
NA
NA
Attributes by original data submitter
Sample
source_name
MEL86 erythroid cell line expressing metabolically biotinylated GATA-1 (MEL Bio-GATA-1)
strain
C57BL/6
cell type
Induced MEL bioGATA-1 cells
chip antibody
GATA-1
Sequenced DNA Library
library_name
GATA-1_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
13592416
Reads aligned (%)
60.4
Duplicates removed (%)
11.8
Number of peaks
758 (qval < 1E-05)
mm9
Number of total reads
13592416
Reads aligned (%)
60.2
Duplicates removed (%)
12.0
Number of peaks
802 (qval < 1E-05)
Base call quality data from
DBCLS SRA