SRX014811
GSM467648: K562 GATA2 ChIP

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GATA2

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
Chromatin IP against GATA2
cell line
K562
chip antibody
GATA2

Sequenced DNA Library

library_name
K562_GATA2_ChIP
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
34284413
Reads aligned (%)
70.2
Duplicates removed (%)
1.8
Number of peaks
11012 (qval < 1E-05)

hg19

Number of total reads
34284413
Reads aligned (%)
69.8
Duplicates removed (%)
2.4
Number of peaks
11189 (qval < 1E-05)

Base call quality data from DBCLS SRA