SRX014810
GSM467647: K562 GATA1 ChIP

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GATA1

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
Chromatin IP against GATA1
cell line
K562
chip antibody
GATA1

Sequenced DNA Library

library_name
K562_GATA1_ChIP
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
20523658
Reads aligned (%)
94.7
Duplicates removed (%)
5.1
Number of peaks
5153 (qval < 1E-05)

hg38

Number of total reads
20523658
Reads aligned (%)
95.3
Duplicates removed (%)
4.4
Number of peaks
5049 (qval < 1E-05)

Base call quality data from DBCLS SRA